PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g13430.4
Common NameLR48_Vigan03g168800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 267aa    MW: 29135.6 Da    PI: 4.8783
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g13430.4genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.4e-1873124156
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     + y+GVr +  +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g+
  Vang04g13430.4  73 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 124
                     57*****998.**********843...6***********************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-1373124IPR001471AP2/ERF domain
CDDcd000181.30E-3273133No hitNo description
SMARTSM003802.0E-3774137IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-2174132IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-3174132IPR001471AP2/ERF domain
PROSITE profilePS5103223.24874131IPR001471AP2/ERF domain
PRINTSPR003672.9E-107586IPR001471AP2/ERF domain
PRINTSPR003672.9E-1097113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MTISTTTTTT TTITSSSPSS SSSSASSTSS SNSCTKQDSQ TSPPDDSTTA QNQNTPNKEC  60
KKRQRNGDDN KHPSYRGVRM RAWGKWVSEI REPRKKSRIW LGTYPTAEMA ARAHDVAALA  120
IKGHSAYLNF PNLAQDLPRP ITTSPKDIQA AAAKAATTFF DDGKRCEAEK DEQNHTEQAS  180
SSTLCMENTE VEQVQAEEAS PSTLSMDTTQ GSSTSHSTAD DDTLFDLPDL FPDGNNGLFF  240
SYSSSWHLCA ADSGFRLEEQ FLWENY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1675131360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014496759.11e-165PREDICTED: ethylene-responsive transcription factor ERF034-like
SwissprotQ8LBQ73e-69ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0L9U6A80.0A0A0L9U6A8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RVU00.0A0A0S3RVU0_PHAAN; Uncharacterized protein
STRINGGLYMA01G13410.11e-105(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-56ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]